Make sure you do some warm up excersizes.
GT has loads of warm ups, if you search for warm ups
Here is one..http://www.guitartricks.com/lesson.php?input=14209
Above all it might be worthwhile seeing a guitar teacher because it may be a posture issue that can easily be resolve, but left unresolved my cause long term frustration.
Cheers
Rob
www.guitarlessonsnottingham.com Guitar lessons in Nottingham & Via Skype